Open Source Software in Life Science Research Book

Open Source Software in Life Science Research


  • Author : Lee Harland
  • Publisher : Elsevier
  • Release Date : 2012-10-31
  • Genre: Science
  • Pages : 582
  • ISBN 10 : 9781908818249

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Open Source Software in Life Science Research Excerpt :

The free/open source approach has grown from a minor activity to become a significant producer of robust, task-orientated software for a wide variety of situations and applications. To life science informatics groups, these systems present an appealing proposition - high quality software at a very attractive price. Open source software in life science research considers how industry and applied research groups have embraced these resources, discussing practical implementations that address real-world business problems. The book is divided into four parts. Part one looks at laboratory data management and chemical informatics, covering software such as Bioclipse, OpenTox, ImageJ and KNIME. In part two, the focus turns to genomics and bioinformatics tools, with chapters examining GenomicsTools and EBI Atlas software, as well as the practicalities of setting up an ‘omics’ platform and managing large volumes of data. Chapters in part three examine information and knowledge management, covering a range of topics including software for web-based collaboration, open source search and visualisation technologies for scientific business applications, and specific software such as DesignTracker and Utopia Documents. Part four looks at semantic technologies such as Semantic MediaWiki, TripleMap and Chem2Bio2RDF, before part five examines clinical analytics, and validation and regulatory compliance of free/open source software. Finally, the book concludes by looking at future perspectives and the economics and free/open source software in industry. Discusses a broad range of applications from a variety of sectors Provides a unique perspective on work normally performed behind closed doors Highlights the criteria used to compare and assess different approaches to solving problems

Open Source Software in Life Science Research Book

Open Source Software in Life Science Research


  • Author : Lee Harland
  • Publisher : Woodhead Pub Limited
  • Release Date : 2012
  • Genre: Computers
  • Pages : 530
  • ISBN 10 : 1907568972

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Open Source Software in Life Science Research Excerpt :

The free/open source approach has grown from a minor activity to a significant producer of robust, task-orientated software for a wide variety of situations and applications. Examples range from core infrastructure platforms such as the Apache web-server, powerful document indexing and search tools, such as Lucene, through to major user-orientated systems such as Mediawiki (which powers Wikipedia) and Drupal (which powers many diverse websites). To life science informatics groups, these systems present an appealing proposition - high quality software at a very attractive price. The contributors and editors consider how industry and applied research groups have embraced these resources and discuss practical implementations that address real-world business problems.

Open Source Software Policy Options for NASA Earth and Space Sciences Book

Open Source Software Policy Options for NASA Earth and Space Sciences


  • Author : National Academies of Sciences, Engineering, and Medicine
  • Publisher : National Academies Press
  • Release Date : 2019-01-27
  • Genre: Science
  • Pages : 109
  • ISBN 10 : 9780309482714

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Open Source Software Policy Options for NASA Earth and Space Sciences Excerpt :

Modern science is ever more driven by computations and simulations. In particular, the state of the art in space and Earth science often arises from complex simulations of climate, space weather, and astronomical phenomena. At the same time, scientific work requires data processing, presentation, and analysis through broadly available proprietary and community software.1 Implicitly or explicitly, software is central to science. Scientific discovery, understanding, validation, and interpretation are all enhanced by access to the source code of the software used by scientists. This report investigates and recommends options for NASA's Science Mission Directorate (SMD) as it considers how to establish a policy regarding open source software to complement its existing policy on open data. In particular, the report reviews existing data and software policies and the lessons learned from the implementation of those policies, summarizes community perspectives, and presents policy options and recommendations for implementing an open source software policy for NASA SMD.

Encyclopedia of Bioinformatics and Computational Biology Book

Encyclopedia of Bioinformatics and Computational Biology


  • Author : Anonim
  • Publisher : Elsevier
  • Release Date : 2018-08-21
  • Genre: Medical
  • Pages : 3284
  • ISBN 10 : 9780128114322

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Encyclopedia of Bioinformatics and Computational Biology Excerpt :

Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases

Information Resources in Toxicology Book

Information Resources in Toxicology


  • Author : Steve Gilbert
  • Publisher : Academic Press
  • Release Date : 2020-05-16
  • Genre: Medical
  • Pages : 1054
  • ISBN 10 : 9780128137253

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Information Resources in Toxicology Excerpt :

This new fifth edition of Information Resources in Toxicology offers a consolidated entry portal for the study, research, and practice of toxicology. Both volumes represents a unique, wide-ranging, curated, international, annotated bibliography, and directory of major resources in toxicology and allied fields such as environmental and occupational health, chemical safety, and risk assessment. The editors and authors are among the leaders of the profession sharing their cumulative wisdom in toxicology’s subdisciplines. This edition keeps pace with the digital world in directing and linking readers to relevant websites and other online tools. Due to the increasing size of the hardcopy publication, the current edition has been divided into two volumes to make it easier to handle and consult. Volume 1: Background, Resources, and Tools, arranged in 5 parts, begins with chapters on the science of toxicology, its history, and informatics framework in Part 1. Part 2 continues with chapters organized by more specific subject such as cancer, clinical toxicology, genetic toxicology, etc. The categorization of chapters by resource format, for example, journals and newsletters, technical reports, organizations constitutes Part 3. Part 4 further considers toxicology’s presence via the Internet, databases, and software tools. Among the miscellaneous topics in the concluding Part 5 are laws and regulations, professional education, grants and funding, and patents. Volume 2: The Global Arena offers contributed chapters focusing on the toxicology contributions of over 40 countries, followed by a glossary of toxicological terms and an appendix of popular quotations related to the field. The book, offered in both print and electronic formats, is carefully structured, indexed, and cross-referenced to enable users to easily find answers to their questions or serendipitously locate useful knowledge they were not originally aware they needed. Among the many timely topics receiving incre

Biobazaar Book

Biobazaar


  • Author : Janet Hope
  • Publisher : Harvard University Press
  • Release Date : 2008-01-31
  • Genre: Computers
  • Pages : 441
  • ISBN 10 : 9780674026353

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Biobazaar Excerpt :

Hope offers the first sustained and systematic inquiry into the application of open source principles to life sciences. Traversing disciplinary boundaries, she presents an analysis of intellectual property-related challenges confronting the biotechnology industry and paints a detailed picture of "open source biotechnology" as a possible solution.

Entrepreneurship  Innovation  and Platforms Book

Entrepreneurship Innovation and Platforms


  • Author : Jeffrey Furman
  • Publisher : Emerald Group Publishing
  • Release Date : 2017-09-29
  • Genre: Business & Economics
  • Pages : 405
  • ISBN 10 : 9781787430808

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Entrepreneurship Innovation and Platforms Excerpt :

Despite recent advances in our understanding of how innovation and entrepreneurship impact the creation and appropriation of value, numerous questions remain unanswered. This volume draws together scholars working at the forefront of entrepreneurship-, strategy-, and innovation-related domains to explore these questions.

Safeguarding the Bioeconomy Book

Safeguarding the Bioeconomy


  • Author : National Academies of Sciences, Engineering, and Medicine
  • Publisher : National Academies Press
  • Release Date : 2020-03-31
  • Genre: Science
  • Pages : 392
  • ISBN 10 : 9780309495707

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Safeguarding the Bioeconomy Excerpt :

Research and innovation in the life sciences is driving rapid growth in agriculture, biomedical science, information science and computing, energy, and other sectors of the U.S. economy. This economic activity, conceptually referred to as the bioeconomy, presents many opportunities to create jobs, improve the quality of life, and continue to drive economic growth. While the United States has been a leader in advancements in the biological sciences, other countries are also actively investing in and expanding their capabilities in this area. Maintaining competitiveness in the bioeconomy is key to maintaining the economic health and security of the United States and other nations. Safeguarding the Bioeconomy evaluates preexisting and potential approaches for assessing the value of the bioeconomy and identifies intangible assets not sufficiently captured or that are missing from U.S. assessments. This study considers strategies for safeguarding and sustaining the economic activity driven by research and innovation in the life sciences. It also presents ideas for horizon scanning mechanisms to identify new technologies, markets, and data sources that have the potential to drive future development of the bioeconomy.

Open Science by Design Book

Open Science by Design


  • Author : National Academies of Sciences, Engineering, and Medicine
  • Publisher : National Academies Press
  • Release Date : 2018-09-09
  • Genre: Science
  • Pages : 233
  • ISBN 10 : 9780309476249

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Open Science by Design Excerpt :

Openness and sharing of information are fundamental to the progress of science and to the effective functioning of the research enterprise. The advent of scientific journals in the 17th century helped power the Scientific Revolution by allowing researchers to communicate across time and space, using the technologies of that era to generate reliable knowledge more quickly and efficiently. Harnessing today's stunning, ongoing advances in information technologies, the global research enterprise and its stakeholders are moving toward a new open science ecosystem. Open science aims to ensure the free availability and usability of scholarly publications, the data that result from scholarly research, and the methodologies, including code or algorithms, that were used to generate those data. Open Science by Design is aimed at overcoming barriers and moving toward open science as the default approach across the research enterprise. This report explores specific examples of open science and discusses a range of challenges, focusing on stakeholder perspectives. It is meant to provide guidance to the research enterprise and its stakeholders as they build strategies for achieving open science and take the next steps.

Issues in Biological and Life Sciences Research  2011 Edition Book

Issues in Biological and Life Sciences Research 2011 Edition


  • Author : Anonim
  • Publisher : ScholarlyEditions
  • Release Date : 2012-01-09
  • Genre: Science
  • Pages : 5106
  • ISBN 10 : 9781464963339

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Issues in Biological and Life Sciences Research 2011 Edition Excerpt :

Issues in Biological and Life Sciences Research: 2011 Edition is a ScholarlyEditions™ eBook that delivers timely, authoritative, and comprehensive information about Biological and Life Sciences Research. The editors have built Issues in Biological and Life Sciences Research: 2011 Edition on the vast information databases of ScholarlyNews.™ You can expect the information about Biological and Life Sciences Research in this eBook to be deeper than what you can access anywhere else, as well as consistently reliable, authoritative, informed, and relevant. The content of Issues in Biological and Life Sciences Research: 2011 Edition has been produced by the world’s leading scientists, engineers, analysts, research institutions, and companies. All of the content is from peer-reviewed sources, and all of it is written, assembled, and edited by the editors at ScholarlyEditions™ and available exclusively from us. You now have a source you can cite with authority, confidence, and credibility. More information is available at http://www.ScholarlyEditions.com/.

Issues in Biological and Life Sciences Research  2013 Edition Book

Issues in Biological and Life Sciences Research 2013 Edition


  • Author : Anonim
  • Publisher : ScholarlyEditions
  • Release Date : 2013-05-01
  • Genre: Science
  • Pages : 1195
  • ISBN 10 : 9781490106069

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Issues in Biological and Life Sciences Research 2013 Edition Excerpt :

Issues in Biological and Life Sciences Research: 2013 Edition is a ScholarlyEditions™ book that delivers timely, authoritative, and comprehensive information about Additional Research. The editors have built Issues in Biological and Life Sciences Research: 2013 Edition on the vast information databases of ScholarlyNews.™ You can expect the information about Additional Research in this book to be deeper than what you can access anywhere else, as well as consistently reliable, authoritative, informed, and relevant. The content of Issues in Biological and Life Sciences Research: 2013 Edition has been produced by the world’s leading scientists, engineers, analysts, research institutions, and companies. All of the content is from peer-reviewed sources, and all of it is written, assembled, and edited by the editors at ScholarlyEditions™ and available exclusively from us. You now have a source you can cite with authority, confidence, and credibility. More information is available at http://www.ScholarlyEditions.com/.

Contaminants of Emerging Concerns and Reigning Removal Technologies Book

Contaminants of Emerging Concerns and Reigning Removal Technologies


  • Author : Manish Kumar
  • Publisher : CRC Press
  • Release Date : 2022-06-30
  • Genre: Science
  • Pages : 490
  • ISBN 10 : 9781000551044

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Contaminants of Emerging Concerns and Reigning Removal Technologies Excerpt :

With an increased demand for wastewater reuse, groundwater recharge with treated wastewater has been practiced across the globe. As a result, groundwater quality deteriorates by emerging micropollutants from various anthropogenic origins, including untreated wastewater, seepage of landfill leachate, and runoff from agricultural lands. The fate of such emerging and geogenic contaminants in subsurface systems, especially in the groundwater, depends on several factors. Physicochemical properties of contaminants such as octanol-water partition coefficient, dissociation constant, water solubility, susceptibility to biodegradation under anaerobic conditions, and environmental persistence under diverse geological and pH conditions play a critical role during subsurface mass flow. Thus, advanced wastewater treatment techniques, followed by implementing stricter guidelines, are some of the measures that can safeguard water resources. This book, in general, gives an understanding of the fate and mitigation strategies for emerging and geogenic contaminants in the groundwater. The first and second sections provide a detailed insight into various removal techniques and mitigation approaches. Possible treatment strategies, including bioremediation and natural attenuation, are also covered in those sections. Environmental assessment, groundwater vulnerability, health effects, and regulations pertaining to various contaminants are systematically presented in the third section.

Deep Learning for the Life Sciences Book

Deep Learning for the Life Sciences


  • Author : Bharath Ramsundar
  • Publisher : O'Reilly Media
  • Release Date : 2019-04-10
  • Genre: Science
  • Pages : 236
  • ISBN 10 : 9781492039808

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Deep Learning for the Life Sciences Excerpt :

Deep learning has already achieved remarkable results in many fields. Now it’s making waves throughout the sciences broadly and the life sciences in particular. This practical book teaches developers and scientists how to use deep learning for genomics, chemistry, biophysics, microscopy, medical analysis, and other fields. Ideal for practicing developers and scientists ready to apply their skills to scientific applications such as biology, genetics, and drug discovery, this book introduces several deep network primitives. You’ll follow a case study on the problem of designing new therapeutics that ties together physics, chemistry, biology, and medicine—an example that represents one of science’s greatest challenges. Learn the basics of performing machine learning on molecular data Understand why deep learning is a powerful tool for genetics and genomics Apply deep learning to understand biophysical systems Get a brief introduction to machine learning with DeepChem Use deep learning to analyze microscopic images Analyze medical scans using deep learning techniques Learn about variational autoencoders and generative adversarial networks Interpret what your model is doing and how it’s working

Research Anthology on Usage and Development of Open Source Software Book

Research Anthology on Usage and Development of Open Source Software


  • Author : Management Association, Information Resources
  • Publisher : IGI Global
  • Release Date : 2021-06-25
  • Genre: Computers
  • Pages : 904
  • ISBN 10 : 9781799891598

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Research Anthology on Usage and Development of Open Source Software Excerpt :

The quick growth of computer technology and development of software caused it to be in a constant state of change and advancement. This advancement in software development meant that there would be many types of software developed in order to excel in usability and efficiency. Among these different types of software was open source software, one that grants permission for users to use, study, change, and distribute it freely. Due to its availability, open source software has quickly become a valuable asset to the world of computer technology and across various disciplines including education, business, and library science. The Research Anthology on Usage and Development of Open Source Software presents comprehensive research on the design and development of open source software as well as the ways in which it is used. The text discusses in depth the way in which this computer software has been made into a collaborative effort for the advancement of software technology. Discussing topics such as ISO standards, big data, fault prediction, open collaboration, and software development, this anthology is essential for computer engineers, software developers, IT specialists and consultants, instructors, librarians, managers, executives, professionals, academicians, researchers, and students.

Issues in General Science and Scientific Theory and Method  2013 Edition Book

Issues in General Science and Scientific Theory and Method 2013 Edition


  • Author : Anonim
  • Publisher : ScholarlyEditions
  • Release Date : 2013-05-01
  • Genre: Science
  • Pages : 1201
  • ISBN 10 : 9781490109534

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Issues in General Science and Scientific Theory and Method 2013 Edition Excerpt :

Issues in General Science and Scientific Theory and Method: 2013 Edition is a ScholarlyEditions™ book that delivers timely, authoritative, and comprehensive information about Mixed Methods Research. The editors have built Issues in General Science and Scientific Theory and Method: 2013 Edition on the vast information databases of ScholarlyNews.™ You can expect the information about Mixed Methods Research in this book to be deeper than what you can access anywhere else, as well as consistently reliable, authoritative, informed, and relevant. The content of Issues in General Science and Scientific Theory and Method: 2013 Edition has been produced by the world’s leading scientists, engineers, analysts, research institutions, and companies. All of the content is from peer-reviewed sources, and all of it is written, assembled, and edited by the editors at ScholarlyEditions™ and available exclusively from us. You now have a source you can cite with authority, confidence, and credibility. More information is available at http://www.ScholarlyEditions.com/.